Dissemination

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Dissemination

Publications

Crochemore, A. P. Francisco, S. P. Pissis and C. Vaz. “Towards distance-based phylogenetic inference in average-case linear-time.” In 17th International Workshop on Algorithms in Bioinformatics (WABI 2017), Leibniz International Proceedings in Informatics (LIPIcs), 88(9):1-14, 2017. https://doi.org/10.4230/LIPIcs.WABI.2017.9

Dantas, C. Fleitas, A. Almeida, J. Forja, A. P. Francisco, J. Simão and C. Vaz. “NGSPipes: Fostering reproducibility and scalability in biosciences.” In Proceedings of the 8th ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics, 603-603, 2017. URL: https://doi.org/10.1145/3107411.3108213

Francisco, M. Nascimento and C. Vaz. “Dynamic phylogenetic inference for sequence-based typing data.” In Proceedings of the 8th ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics, 604-604, 2017. URL: https://doi.org/10.1145/3107411.3108214

Teixeira, P. T. Monteiro, J. A. Carriço, F. C. Santos and A. P. Francisco. “Using Spark and GraphX to parallelize large-scale simulations of bacterial populations over host contact networks.” In Algorithms and Architectures for Parallel Processing: 17th International Conference, ICA3PP 2017, 591-600, 2017. URL: https://doi.org/10.1007/978-3-319-65482-9_44

Miguel Monteiro, Ana Catarina Fonseca, Ana Teresa Freitas, Teresa Pinho E Melo, Alexandre P Francisco, José M Ferro and Arlindo Oliveira. “Improving the Prediction of Functional Outcome in Ischemic Stroke Patients.” In Workshops on Data Mining in Bioinformatics (BIOKDD) 2018, ACM SIGKDD. URL: https://www.inesc-id.pt/ficheiros/publicacoes/13254.pdf

Mendes de Almeida R, Tavares J, Martins S, Carvalho T, Enguita FJ, Brito D, Carmo-Fonseca M, Lopes LR. (2017) “Whole gene sequencing identifies deep-intronic variants with potential functional impact in patients with hypertrophic cardiomyopathy.” Plos One 12(8):e0182946. URL: https://doi.org/10.1371/journal.pone.0182946

Costa MHG, McDevitt TC, Cabral JMS, da Silva CL, Ferreira FC. “Tridimensional configurations of human mesenchymal stem/stromal cells to enhance cell paracrine potential towards wound healing processes.” J Biotechnol. 2017 Nov 20;262:28-39. doi: 10.1016/j.jbiotec.2017.09.020 URL: http://www.sciencedirect.com/science/article/pii/S016816561731684X?via%3Dihub

Costa MHG, Soure AM, Cabral JMS, Ferreira FC, da Silva CL. “Hematopoietic niche – exploring biomimetic cues to improve the functionality of Hematopoietic Stem/Progenitor Cells (HSPC).” Biotechnology Journal, Novembro 2017. URL: https://doi.org/10.1002/biot.201700088

A. Carriço, M. Crochemore, A. P. Francisco, S. P. Pissis, B. Ribeiro-Gonçalves and C. Vaz. “Fast phylogenetic inference from typing data.” Algorithms for Molecular Biology, 2018, 13:4. URL: https://doi.org/10.1186/s13015-017-0119-7

Miguel Monteiro, Ana Catarina Fonseca, Ana Teresa Freitas, Teresa Pinho e Melo, Alexandre P. Francisco, José M. Ferro, Arlindo L. Oliveira. “Using Machine Learning to Improve the Prediction of Functional Outcome in Ischemic Stroke Patients,” in IEEE/ACM Transactions on Computational Biology and Bioinformatics, March 2018. doi: 10.1109/TCBB.2018.2811471. URL: http://ieeexplore.ieee.org/stamp/stamp.jsp?tp=&arnumber=8305616&isnumber=4359833


Accepted (pending publication)

C. Silva, C. S. Moura, G. Borrecho, P. Henriques, A. P. Alves de Matos, J. M. S. Cabral, R. J. Linhardt F. C. Ferreira, “Mesenchymal stem cells combined with biomaterial scaffolds and glycosaminoglycan supplementation as an integrated strategy towards articular cartilage repair: biochemical, structural and morphological analysis”, Annals of Medicine, Peer reviewed proceeding (Accepted at 01/11/2017; abstract: https://www.authenticus.pt/pt/publications/view/719089

(book chapter) Rodrigues CAV, Nogueira DES, Branco M, Silva TP, Gomes AR, Diogo MM, Cabral JMS, “Bioreactors for Human Pluripotent Stem Cell Expansion and Differentiation”, in “Stem Cell Bioreactors”, Cabral, J.M.S., Lobato da Silva, C. (ed.), Taylor & Francis.


Oral Communications – International Events

Maria Margarida Diogo, “Xeno-free production and recovery of human pluripotent stem cells using synthetic dissolvable microcarriers”, Scale-up and Manufacturing of Cell-based Therapies V, San Diego, CA, USA, January 15-19, 2017.

Fernandes-Platzgummer A, “Scalable production of human mesenchymal stem/stromal cells in microcarrier-based stirred culture systems”, 1st Stem Cell Community Day, organized by Eppendorf, Hamburg, Germany, April 4, 2017.

C. Silva, R. N. Udangawa, F. F. Garrudo, P.E. Mikael, F. C. Ferreira, R. J. Linhardt “Biodegradable aligned core-shell nanofibers for articular cartilage tissue engineering”, oral presentation by J. C. Silva at 254th ACS National Meeting in Washington, DC, August 20-24, 2017.

F. F. Garrudo, J.C.F. Silva, C.A.V. Rodrigues, J.M.F. Morgado, R.J. Linhardt, F.C. Ferreira, “Polybenzimidazole electrospun nanofibers for neural cell culture”, oral presention by F. F. F. Garrudo at 254th ACS National Meeting in Washington, DC, August 20-24, 2017.

Fonseca, A. Serra-­Caetano, R.R. Barbosa, S.P. Silva, L. Hammarstrom, M. Cascalho, S.L. Silva, A.E. Sousa, “Novel TACI variant in Common Variable Immunodeficiency”, European Immunodeficiencies (ESID) Meeting 2017, Edinburgh, UK, September 2017.

Tokuanga, H. Nunes-Cabaço, A.E. Sousa, “Differentiation of FOXP3+ regulatory T cells in the human thymus: unbiased approaches circumventing sequential-gating strategy”, 7th International Workshop of Kyoto T cell Conference, a Global Thymus Network meeting KTCC2017, Kyoto, Japan, March 2017.

Ramalho-dos-Santos, L. Martins, J. Barata, A. E. Sousa, H. Nunes-Cabaço, “IL-4 induces coreceptor reversal in CD4-committed human thymocytes”, 7th International Workshop of Kyoto T cell Conference, a Global Thymus Network meeting KTCC2017, Kyoto, Japan, March 2017.

Crochemore, A. P. Francisco, S. P. Pissis and C. Vaz. “Towards distance-based phylogenetic inference in average-case linear-time.” In 17th International Workshop on Algorithms in Bioinformatics (WABI 2017), Leibniz International Proceedings in Informatics (LIPIcs), 88(9):1-14, 2017. https://doi.org/10.4230/LIPIcs.WABI.2017.9

Dantas, C. Fleitas, A. Almeida, J. Forja, A. P. Francisco, J. Simão and C. Vaz. “NGSPipes: Fostering reproducibility and scalability in biosciences.” In Proceedings of the 8th ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics, 603-603, 2017. https://doi.org/10.1145/3107411.3108213

Francisco, M. Nascimento and C. Vaz. “Dynamic phylogenetic inference for sequence-based typing data.” In Proceedings of the 8th ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics, 604-604, 2017. https://doi.org/10.1145/3107411.3108214

Teixeira, P. T. Monteiro, J. A. Carriço, F. C. Santos and A. P. Francisco. “Using Spark and GraphX to parallelize large-scale simulations of bacterial populations over host contact networks.” In Algorithms and Architectures for Parallel Processing: 17th International Conference, ICA3PP 2017, 591-600, 2017.  https://doi.org/10.1007/978-3-319-65482-9_44

Miguel Monteiro, Ana Catarina Fonseca, Ana Teresa Freitas, Teresa Pinho E Melo, Alexandre P Francisco, José M Ferro and Arlindo Oliveira. “Improving the Prediction of Functional Outcome in Ischemic Stroke Patients.” In Workshops on Data Mining in Bioinformatics (BIOKDD) 2018, ACM SIGKDD. https://www.inesc-id.pt/ficheiros/publicacoes/13254.pdf

Rodrigues CAV, Fernandes TG, Giroux D, Hashimura Y, Wesselschmidt R, Diogo MM, Lee B, Cabral JMS, “Development Of A Scale-Down Approach To The Scalable Culture Of Induced Pluripotent Stem Cells On Microcarriers Using Single-Use Vertical-Wheel Bioreactors Under Xeno-Free Conditions”, Scale-up and Manufacturing of Cell-Based Therapies IV, San Diego, CA USA, January 15-18, 2017.

Fernandes-Platzgummer A, De Soure AM, Huang Y-F, Milligan W, Mizukami A, Swiech K, Silva CL, Cabral JMS, “Umbilical cord matrix derived-mesenchymal stem/stromal cell production in microcarrier-based culture systems”, Scale-up and Manufacturing of Cell-Based Therapies IV, San Diego, CA USA, January 15-18, 2017.

Rodrigues CAV, Silva TP, Fernandes TG, Hashimura Y, Wesselschmidt R, Diogo MM, Lee B, Cabral JMS, “Scalable culture of induced pluripotent cells on microcarriers under xeno-free conditions using single-use vertical-wheel™ bioreactors”, 1st Stem Cell Community Day, Organized by Eppendorf, Hamburg, Germany, April 4, 2017.

Bear MM, Hervy M, Henry D, Weber JL, Scibek J, Roosloot R, Das R , Vieira SFV, Rodrigues AL, Rodrigues CAV, Badenes SM, Diogo MM, Cabral JMS, Zhou Y, “Dissolvable Microcarriers For Efficient Cell Production And Recovery”, Bioprocessing of Advanced Cellular Therapies Congress, London, UK, June 8-9, 2017.

Bear MM, Hervy M, Henry D, Weber JL, Scibek J, Roosloot R, Das R , Vieira SFV, Rodrigues AL, Rodrigues CAV, Badenes SM, Diogo MM, Cabral JMS, Zhou Y, “Dissolvable Microcarriers For Efficient Cell Production And Recovery”, International Society For Stem Cell Research Annual Meeting, Boston, USA, June 14-17, 2017.

C. Silva, C. S. Moura, G. Borrecho, A.P.A. de Matos, J. M. S. Cabral, R. J. Linhardt, F. C. Ferreira, “Effects of chondroitin sulfate and hyaluronic acid supplementation in the chondrogenic differentiation of bone marrow/synovial – derived mesenchymal stem cells on poly (ε-caprolactone) scaffolds towards cartilage repair”, poster presentation by J. C. Silva at 254th ACS National Meeting in Washington, DC, August 20-24, 2017.

F.F. Garrudo, J.C.F. Silva, P.E. Mikael, F.C. Ferreira, R.J. Linhardt, “Glycosaminoglycan change in differentiating ReN cells”, Poster presention by F. F. F. Garrudo at 254th American Chemical Society National Meeting & Exposition, Washington, DC, August 20-24, 2017.

Silveira C, Sousa AC, Janeiro A, Felizardo M, Carmo-Fonseca M; “ddPCR to detect EGFR T790M”; Liquid Biopsies EMBL Course, EMBL Heidelberg, Germany, 09-13 October 2017.

Silva, T.P., Bekman, E., Fernandes, T.G., Rodrigues, C.A.V., Diogo, M.M., Cabral, J.M.S., Carmo-Fonseca, M., “Cerebellar differentiation and maturation from Human Induced Pluripotent Stem Cells”, International Society for Stem Cell Research, Annual Meeting, Boston, USA, June 14-17, 2017.


Oral Communications – National Events

Rodrigues CAV, Silva TP, Fernandes TG, Hashimura Y, Wesselschmidt R, Diogo MM, Lee B, Cabral JMS, “Scalable Expansion Of Human Induced Pluripotent Cells On Microcarriers Using Single-Use Vertical-Wheel Bioreactors”, 10th International Meeting of the Portuguese Society for Stem Cells and Cell Therapies, Covilhã, Portugal, October 12-14, 2017.

de Sousa Pinto D, Ahsan T, Cabral JMS, da Silva CL, “Highlighting the Superior In Vitro Angiogenic Potential of Human Umbilical Cord Matrix-Derived Mesenchymal Stem/Stromal Cells Cultured Under Dynamic Conditions”, 10th International Meeting of the Portuguese Society for Stem Cells and Cell Therapies, Covilhã, Portugal, October 12-14, 2017.

Silva, T.P., Bekman, E., Fernandes, T.G., Rodrigues, C.A.V., Diogo, M.M., Cabral, J.M.S., Carmo-Fonseca, M., “Cerebellar differentiation and maturation from Human Induced Pluripotent Stem Cells”, 10th International Meeting of the Portuguese Society for Stem Cells and Cell Therapies, Covilhã, Portugal, October 12-14, 2017.

Gonçalves Rodrigo, Ribeiro M., Martins S., Carvalho T., Carmo-Fonseca M. “Analysis of alternative splicing in hiPSC derived cardiomyocytes”, 10th International Meeting of the Portuguese Society for Stem Cells and Cell Therapies, Covilhã, Portugal, 12-14 Oct, 2017.

Ribeiro, M., Tavares J., Garcia B., Carmo-Fonseca M., ”Discriminating power of computational tools for genetic diagnosis of hypertrophic cardiomyopathy”, Poster presentation at 21ª reunião anual da Sociedade Portuguesa de Genética Humana, Caparica, Portugal,  16-18 Nov, 2017.

Silva, T.P., Bekman, E., Fernandes, T.G., Rodrigues, C.A.V., Diogo, M.M., Cabral, J.M.S., Carmo-Fonseca, M., “Cerebellar differentiation and maturation from Human Induced Pluripotent Stem Cells”, PhD Open Days, Lisbon, Portugal, April 5-6, 2017.

Silveira C, “Precision Oncology in Breast Cancer”, 4ª Reunião de Utilizadores de Plataformas de NGS, Porto, Portugal, 2 October 2017.

Costa, L, “Liquid Biopsies in Clinical Oncology: how many dimensions and how much dynamics?” Proc. of Porto Cancer Meeting, Porto, May 2017. URL: https://pt.slideshare.net/PatrciaCorredeira/porto-cancer-meeting-may-2017/secret/MVB0CE2YyElG6t (invited speaker)

Carmo-Fonseca, M. Stem cells in heart failure. Hipertensão arterial e insuficiência cardíaca – estado da arte, Universidade de Lisboa, Portugal. 6 January 2017.

Carmo-Fonseca, M. Hearts-on-a-chip. “Leading the Heart” meeting organized by Bayer. Lisboa, Portugal. 25 March 2017.

Carmo-Fonseca, M. Novel molecular technologies for hematological malignancies. “Leaping Forward” international clinical congress. Lisboa, Portugal. 13 May 2017.

Carmo-Fonseca, M. Uma viagem pela biologia do cancro do pulmão. Astrazeneca Lung Cancer Summit 2017. Lisboa, Portugal. 20 May 2017.

Carmo-Fonseca, M. Medicina de precisão em oncologia: desafios futuros. Lição Ducla Soares, Reunião Anual da Sociedade Portuguesa de Hematologia. Vila Moura, Portugal. 18 November 2017.

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